[Biopython-dev] [Bug 2724] Unclear? changes between 1.47 and 1.49

[bugzilla-daemon at portal.open-bio.org]

http://bugzilla.open-bio.org/show_bug.cgi?id=2724





------- Comment #1 from biopython-bugzilla at maubp.freeserve.co.uk  2009-01-03 20:10 EST -------
Bio.cdistance was an optional C implementation used within Bio.distance - the C
code was used if available to speed up calculations.  You can see the (now
deleted) code in CVS here:
http://cvs.biopython.org/cgi-bin/viewcvs/viewcvs.cgi/biopython/Bio/Attic/cdistancemodule.c?hideattic=0&cvsroot=biopython

This C code (Bio.cdistance) was removed when the python code (Bio.distance) was
deprecated for release 1.49.

This was discussed at the start of October on the mailing list, see this
thread:
http://lists.open-bio.org/pipermail/biopython/2008-October/004532.html


This should have been mentioned in the DEPRECATED file, but wasn't.  I've
update this in CVS, see revision 1.41

http://cvs.biopython.org/cgi-bin/viewcvs/viewcvs.cgi/biopython/DEPRECATED?cvsroot=biopython

Thanks for spotting this omission.


-- 
Configure bugmail: http://bugzilla.open-bio.org/userprefs.cgi?tab=email
------- You are receiving this mail because: -------
You are the assignee for the bug, or are watching the assignee.