[Biopython-dev] [Bug 2767] Bio.SeqIO support for FASTQ and QUAL files

[bugzilla-daemon at portal.open-bio.org]

http://bugzilla.open-bio.org/show_bug.cgi?id=2767





------- Comment #2 from biopython-bugzilla at maubp.freeserve.co.uk  2009-02-19 12:44 EST -------
Created an attachment (id=1245)
 --> (http://bugzilla.open-bio.org/attachment.cgi?id=1245&action=view)
Patch for Tests/test_SeqIO.py and Bio/SeqIO/__init__.py

This patches Bio/SeqIO/__init__.py to define "fastq" and "qual" as input and
output file formats.

It also patches Tests/test_SeqIO.py to include a couple of FASTQ and QUAL
files, and cope with None as a SeqRecord's seq.


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