[Biopython-dev] [Bug 2762] GFF capability in SeqIO

[bugzilla-daemon at portal.open-bio.org]

http://bugzilla.open-bio.org/show_bug.cgi?id=2762





------- Comment #3 from biopython-bugzilla at maubp.freeserve.co.uk  2009-02-18 09:34 EST -------
(In reply to comment #2)
> If you can, you should ask to the maintainers and the other bio.* projects and
> make your patch as much compatible with their.

I'm well aware of one very practical issue regarding compatibility between the
Bio* projects, which is for BioSQL.  Ideally regardless of which Bio* toolkit
you use to load a sequence file into a BioSQL database, they should all record
the information in the same way.  See
http://lists.open-bio.org/pipermail/biosql-l/2009-February/001492.html for a
discussion of how GFF files should/could be stored in a BioSQL database.


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