[Biopython-dev] [Bug 2759] Unit test for Bio.PDB.HSExposure
bugzilla-daemon at portal.open-bio.org
bugzilla-daemon at portal.open-bio.org
Thu Feb 12 10:09:29 EST 2009
http://bugzilla.open-bio.org/show_bug.cgi?id=2759
------- Comment #5 from dalloliogm at gmail.com 2009-02-12 10:09 EST -------
(In reply to comment #4)
> > Then, it would be good to put also the call to PDB.PDBStructure to a global
> > fixture, to avoid to repeat it for every test.
>
> NO! That would be a very bad idea here. The HSExposure calls MODIFY the model
> passed to them, so for a clean test we NEED a fresh model each time.
Now I saw it, you're right!
> > Moreover, I will generalize all the know values and put them as variables,
> > so later you will be able to apply the same test to other files by just
> > subclassing the test.
>
> You would also have to extract the individual exposure scores. It would be
> simple to get these (and the residue names) as lists, and then check every
> single residue matches the expected values (rather than the short cut I used to
ok, I did it..
>
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