[Biopython-dev] [Bug 2750] New: EMBL format: reference titles split across lines are not parsed correctly; pmids are not parsed

[bugzilla-daemon at portal.open-bio.org]

http://bugzilla.open-bio.org/show_bug.cgi?id=2750

           Summary: EMBL format: reference titles split across lines are not
                    parsed correctly; pmids are not parsed
           Product: Biopython
           Version: 1.49
          Platform: PC
        OS/Version: Linux
            Status: NEW
          Severity: normal
          Priority: P2
         Component: Main Distribution
        AssignedTo: biopython-dev at biopython.org
        ReportedBy: wolfgang.resch at gmail.com


for example the following embl record:

ID   cel-let-7         standard; RNA; CEL; 99 BP.
XX
AC   MI0000001;
XX
DE   Caenorhabditis elegans let-7 stem-loop
XX
RN   [1]
RX   PUBMED; 11679671.
RA   Lau NC, Lim LP, Weinstein EG, Bartel DP, Lim LP, Lau NC, Weinstein EG;
RT   "An abundant class of tiny RNAs with probable regulatory roles in
RT   Caenorhabditis elegans";
RL   Science. 294:858-862(2001).
XX
FH   Key             Location/Qualifiers
FH
FT   miRNA           17..38
FT                   /accession="MIMAT0000001"
FT                   /product="cel-let-7"
FT                   /evidence=experimental
FT                   /experiment="cloned [1-3,5], Northern [1], PCR [4]"
XX
SQ   Sequence 99 BP; 26 A; 19 C; 24 G; 0 T; 30 other;
     uacacugugg auccggugag guaguagguu guauaguuug gaauauuacc accggugaac       
60
     uaugcaauuu ucuaccuuac cggagacaga acucuucga                              
99
//

is parsed as follows:

authors: Lau NC, Lim LP, Weinstein EG, Bartel DP, Lim LP, Lau NC, Weinstein EG;
title: Caenorhabditis elegans";
journal: Science. 294:858-862(2001).
medline id: 
pubmed id: 
comment:


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