[Biopython-dev] [Bug 2943] MMCIFParser only handling a single model.

[bugzilla-daemon at portal.open-bio.org]

http://bugzilla.open-bio.org/show_bug.cgi?id=2943





------- Comment #15 from TallPaulInJax at yahoo.com  2009-12-24 10:37 EST -------
Hi Michiel,

"I have a well-designed MMCIF parser written independently": Very interesting!
Is it written solely in Python as well? I will say the parser I wrote is slower
than I would like, so if you have an alternative?

"Since the new MMCIF parser does not use flex, I would think that the previous
division into MMCIF2Dict and MMCIFParser may not be needed for the new parser."
I'm not expert enough in Python and in BioPython to know the correct call here.
Perhaps Peter could answer this? I personally like the separation of concerns
so that if someone else wanted to write their own parser, the code is modular
in nature and supports doing that.

Thanks for your help, Michiel!

Paul


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