[Biopython-dev] [Bug 2866] SQLite support for BioSQL

bugzilla-daemon at portal.open-bio.org bugzilla-daemon at portal.open-bio.org
Thu Dec 10 14:54:17 UTC 2009


http://bugzilla.open-bio.org/show_bug.cgi?id=2866





------- Comment #13 from biopython-bugzilla at maubp.freeserve.co.uk  2009-12-10 09:54 EST -------
(In reply to comment #11)
> 
> I will be able to test the effect of your changes on MySQL, hopefully Cymon
> can do this on PostgreSQL - not that I anticipate and regressions, but best
> to be sure ;)
> 

The branch still merges cleanly onto the trunk (I had already manually applied
the Bio/SeqIO/InsdcIO.py date fix to the trunk). Testing "as is" on Mac OS X
10.5 with Apple's Python 2.5.2 uses SQLite, and works. Changing setup_BioSQL.py
to use MySQL also works fine :)

I have not yet tried this on Windows.


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