[Biopython-dev] [Bug 2961] Adding undocumented file format switches to MUSCLE wrapper

[bugzilla-daemon at portal.open-bio.org]

http://bugzilla.open-bio.org/show_bug.cgi?id=2961





------- Comment #9 from cymon.cox at gmail.com  2009-12-06 14:43 EST -------
(In reply to comment #8)
> (In reply to comment #7)
> > Created an attachment (id=1410)
 --> (http://bugzilla.open-bio.org/attachment.cgi?id=1410&action=view) [details] [details]
> > Change Application cmdline tests to use subprocess module
> > 
> 
> Lovely - applied as is - thanks again :)
> 
> Did you want to add tests for the new MUSCLE output options, or can we close
> this bug now Cymon?

There's is one in the patch called: test_with_multiple_output_formats that
writes to stdout, phylip interleaved, and clustalw strict, using the -phyi and
-clwstrict options.

I think it can be closed.
Cheers, C.


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