[Biopython-dev] [Bug 2969] Addition of SeqmatchallCommandline to Emboss/Applications.py

[bugzilla-daemon at portal.open-bio.org]

http://bugzilla.open-bio.org/show_bug.cgi?id=2969


biopython-bugzilla at maubp.freeserve.co.uk changed:

           What    |Removed                     |Added
----------------------------------------------------------------------------
             Status|NEW                         |RESOLVED
         Resolution|                            |FIXED




------- Comment #3 from biopython-bugzilla at maubp.freeserve.co.uk  2009-12-10 07:43 EST -------
(In reply to comment #2)
> Do we want to set any particular policy for the sequence-associated and
> outfile-associated arguments?  Their inclusion in the command-line wrappers
> is pretty inconsistent, which is why I left them out in the first place.

In the long term, I'd like us to look at generating the wrappers automatically
from the EMBOSS ACD files which define their tool options. For now, since some
EMBOSS tools have so many options, they have been added in a somewhat ad-hoc
basis based on what the coder thought most important, or user feedback.

Fix checked in with addition of aformat option.

Thanks! Peter


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