[Biopython-dev] [Bug 2815] Bio.Application command line interfaces

[bugzilla-daemon at portal.open-bio.org]

http://bugzilla.open-bio.org/show_bug.cgi?id=2815





------- Comment #20 from cymon.cox at gmail.com  2009-04-29 07:05 EST -------
(In reply to comment #18)
> (In reply to comment #17)
> Also, would you be able to look into making the Prank test faster to run? Maybe
> use a smaller example input file?  After we do that, I'd like to use it to test
> the Nexus parser via Bio.AlignIO (just something simple which won't be affected
> by gap differences between different versions of PRANK - like my tests for
> MUSCLE).

Reduced run time from 8s to 1s, added asserts for Nexus outfile parsing.

Pushed to applic-int
C.


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