[Biopython-dev] [Bug 2819] Bio.SeqIO support for NCBI protein tables (*.ptt files)

bugzilla-daemon at portal.open-bio.org bugzilla-daemon at portal.open-bio.org
Wed Apr 22 16:19:15 UTC 2009


http://bugzilla.open-bio.org/show_bug.cgi?id=2819





------- Comment #3 from biopython-bugzilla at maubp.freeserve.co.uk  2009-04-22 12:19 EST -------
Created an attachment (id=1284)
 --> (http://bugzilla.open-bio.org/attachment.cgi?id=1284&action=view)
Patch to Tests/test_SeqIO_features.py to check "genbank" vs "ptt" parsing

Requires additional input files from the NCBI to go in Tests/GenBank,

ftp://ftp.ncbi.nih.gov/genomes/Protozoa/Cryptosporidium_parvum/NC_006980.ptt
ftp://ftp.ncbi.nih.gov/genomes/Bacteria/Yersinia_pestis_biovar_Microtus_91001/NC_005816.ptt


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