[Biopython-dev] SwissProt parsing inconsistency between Bio.SeqIO, Bio.SwissProt

[Peter Cock]

On Wed, Apr 22, 2009 at 3:31 PM, Michiel de Hoon <mjldehoon at yahoo.com> wrote:
>
> --- On Tue, 4/21/09, Peter Cock <p.j.a.cock at googlemail.com> wrote:
>
>> Thinking this over, we should take that SwissProt file and
>> load it into BioSQL using BioPerl, and see how they dealt
>> with the DE lines, and try and do the same for Bio.SeqIO
>> in order that loading it into BioSQL with Biopython gives
>> more or less the same thing.
>
> Good point. Does anybody know how BioPerl stores SwissProt files in SQL databases? I know neither Perl nor SQL ...
>

Not off hand, but I know enough about BioPerl to be able to load the
file into a BioSQL database.  I'll post back later (but probably not
today).

Peter