[Biopython-dev] Bio.Motif breaks epydoc?

[Bartek Wilczynski]

Hi

On Thu, Apr 16, 2009 at 12:14 AM, Peter <peter at maubp.freeserve.co.uk> wrote:

> How about putting it in Bio/Motif/_Motif.py?  That makes it clear
> people are expected to access it via Bio.Motif.Motif, and not go via
> the module.  This is what Leighton and I did for GenomeDiagram which
> was a very similar situation.  Using an underscore denotes a private
> module, so you could at a later date rename it to something else
> without worrying about backwards compatibiltiy (if you do change your
> mind).
>
OK, I'll update the source tomorrow.

> Are you planning any documentation to go with this?  It would be nice
> to include it with Biopython 1.50 but not essential.

There is a cookbook-style tutorial in Docs/cookbook/motif. I'm not sure
if it's ready for inclusion into the official tutorial. I'm hoping to add some
more features soon and then it could be improved and included into the
tutorial.

cheers
  Bartek