[Biopython-dev] [Bug 2808] Bio.SeqIO "ig" format parser doesn't deal with optional 1 terminator

[bugzilla-daemon at portal.open-bio.org]

http://bugzilla.open-bio.org/show_bug.cgi?id=2808


biopython-bugzilla at maubp.freeserve.co.uk changed:

           What    |Removed                     |Added
----------------------------------------------------------------------------
             Status|NEW                         |RESOLVED
         Resolution|                            |FIXED




------- Comment #1 from biopython-bugzilla at maubp.freeserve.co.uk  2009-04-10 13:29 EST -------
(In reply to comment #0)
>
> The Bio.SeqIO "ig" parser should be aware of the (optional) terminal "1"
> marker, and not include it in the returned sequence.
>

Fixed in CVS,

Bio/SeqIO/IgIO.p revision 1.5
Tests/test_Emboss.py revision 1.10

>
> Perhaps we should even add this when writing the files.
> 

We don't write out ig files so this isn't an issue at the moment.


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