[Biopython-dev] [Bug 2803] New: Insure Alignment objects are passed to AlignIO.write()
bugzilla-daemon at portal.open-bio.org
bugzilla-daemon at portal.open-bio.org
Wed Apr 1 14:41:24 UTC 2009
http://bugzilla.open-bio.org/show_bug.cgi?id=2803
Summary: Insure Alignment objects are passed to AlignIO.write()
Product: Biopython
Version: Not Applicable
Platform: PC
OS/Version: Linux
Status: NEW
Severity: normal
Priority: P2
Component: Main Distribution
AssignedTo: biopython-dev at biopython.org
ReportedBy: cymon.cox at gmail.com
Insure Alignment objects are passed to AlignIO.write()
Stops this kind of abuse:
records = list(SeqIO.parse(open("Tests/NBRF/DMA_nuc.pir", "r"), "pir"))
AlignIO.write([records], open("alignIO.fasta", "w"), "fasta")
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