[Biopython-dev] Nice small test case for fuzzy locations
Peter
peter at maubp.freeserve.co.uk
Wed Apr 22 07:00:19 EDT 2009
Hi all,
This is a nice small GenBank file with fuzzy locations, joins, and fuzzy joins:
ftp://ftp.ncbi.nih.gov/genomes/Protozoa/Cryptosporidium_parvum/NC_006980.gbk
I think this will make an excellent test case, see new unittest based
Tests/test_SeqIO_feature.py which we can extend to include GFF or PTT
files when they are in Bio.SeqIO too. The good news is our non-fuzzy
locations appear to be doing just what GenBank does - you did a good
job there Brad :)
If anyone comes across a better example file let us know (i.e. also
very small, but with between positions, one of position etc as well).
Peter
More information about the Biopython-dev
mailing list