[Biopython-dev] [Bug 2815] New: Bio.Application MUSCLE command line interface

[bugzilla-daemon at portal.open-bio.org]

http://bugzilla.open-bio.org/show_bug.cgi?id=2815

           Summary: Bio.Application MUSCLE command line interface
           Product: Biopython
           Version: Not Applicable
          Platform: PC
        OS/Version: All
            Status: NEW
          Severity: enhancement
          Priority: P2
         Component: Main Distribution
        AssignedTo: biopython-dev at biopython.org
        ReportedBy: cymon.cox at gmail.com


Attached is a module to run the MUSCLE alignment programme based on the
Bio.Applications interface.

A couple of helper functions are included MuscleAlign and ProfileMuscleAlign.
Discussion on the dev-list suggests that helper functions are superfluous.
Maybe, but I thought I'd include them anyway. A couple of unittests are
included for the helper funcs.

C.


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