[Biopython-dev] Bio.EMBOSS wrappers

[Peter]

On 4/10/09, Peter <biopython at maubp.freeserve.co.uk> wrote:
> Hi
>
>  Those of you following the CVS RSS feed will have noticed a lot of
>  activity on my new unit test test_Emboss.py, which now works on
>  Windows, Linux and Mac OS (provided EMBOSS is installed), and does
>  four main tasks:
>
>  - runs needle, checks Bio.AlignIO can parse the output
>  - runs water, checks Bio.AlignIO can parse the output
>  - runs seqret to check Bio.SeqIO
>  - runs seqret to check Bio.AlignIO

It now also runs transeq to check the Bio.Seq translations on all
common tables.  This has shown up some differences in our translations
for ambiguous sequences - I may have found a bug in EMBOSS...

Peter