[Biopython-dev] [Bug 2803] New: Insure Alignment objects are passed to AlignIO.write()

bugzilla-daemon at portal.open-bio.org bugzilla-daemon at portal.open-bio.org
Wed Apr 1 10:41:24 EDT 2009


http://bugzilla.open-bio.org/show_bug.cgi?id=2803

           Summary: Insure Alignment objects are passed to AlignIO.write()
           Product: Biopython
           Version: Not Applicable
          Platform: PC
        OS/Version: Linux
            Status: NEW
          Severity: normal
          Priority: P2
         Component: Main Distribution
        AssignedTo: biopython-dev at biopython.org
        ReportedBy: cymon.cox at gmail.com


Insure Alignment objects are passed to AlignIO.write()

Stops this kind of abuse:
records = list(SeqIO.parse(open("Tests/NBRF/DMA_nuc.pir", "r"), "pir"))
AlignIO.write([records], open("alignIO.fasta", "w"), "fasta")


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