[Biopython-dev] Modules to be removed from Biopython

Brad Chapman chapmanb at 50mail.com
Tue Sep 23 12:08:09 UTC 2008


Hi Peter;
Thanks for your work cleaning this up.

> Open questions:
> * Bio.DBXRef - does anyone known what this is for?
> * Bio.SGMLExtractor - deprecated in 1.46, ready for removal?

DBXref is associated with all the Martel parsing, so it can be
removed/deprecated as well. It was used in building SeqRecords from
Martel descriptions (Bio.builders.SeqRecord.sequence).

Brad
-- 
Brad Chapman
Codon Devices 
http://www.codondevices.com




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