[Biopython-dev] NumPy conversion / Bio.KDTree / Bio.Cluster.

[Michiel de Hoon]

Hi everybody,

I just noticed that one file is missing in Biopython's CVS. I'll upload it as soon as possible but it may take a day or so. Sorry for the trouble.

--Michiel


--- On Sun, 9/14/08, Michiel de Hoon <mjldehoon at yahoo.com> wrote:

> From: Michiel de Hoon <mjldehoon at yahoo.com>
> Subject: [Biopython-dev] NumPy conversion / Bio.KDTree / Bio.Cluster.
> To: biopython-dev at biopython.org
> Date: Sunday, September 14, 2008, 9:23 AM
> Hi everybody,
> 
> I just committed a bunch of changes to Bio.Cluster,
> Bio.KDTree, and setup.py that deal with the old Numerical
> Python to new NumPy conversion. With these changes,
> Biopython should compile with NumPy; any remaining
> references to the old Numerical Python are at the
> Python-level only. Since these are rather big changes,
> please try with the current version of CVS to see if
> everything compiles cleanly and all tests pass. Comments,
> questions, suggestions are welcome.
> 
> I also uploaded a plain C (instead of C++) version of
> Bio.KDTree, and adjusted setup.py accordingly.
> 
> --Michiel.
> 
> 
>       
> _______________________________________________
> Biopython-dev mailing list
> Biopython-dev at lists.open-bio.org
> http://lists.open-bio.org/mailman/listinfo/biopython-dev