[Biopython-dev] test_SVDSuperimposer.py

[Michiel de Hoon]

Try if the eigenvalues function in Numerical Python works. If it hangs, you'll know the problem is in Numerical Python. 

--Michiel

--- On Mon, 9/8/08, Peter Cock <p.j.a.cock at googlemail.com> wrote:

> From: Peter Cock <p.j.a.cock at googlemail.com>
> Subject: Re: [Biopython-dev] test_SVDSuperimposer.py
> To: mjldehoon at yahoo.com
> Cc: "BioPython-Dev Mailing List" <biopython-dev at biopython.org>
> Date: Monday, September 8, 2008, 6:43 AM
> On Mon, Sep 8, 2008 at 11:36 AM, Michiel de Hoon
> <mjldehoon at yahoo.com> wrote:
> > When installing Numerical Python, run
> >
> > python setup.py config
> >
> > before build, install.
> > (assuming you are using Numerical Python version
> 24.2).
> >
> > --Michiel.
> 
> I've checked and it is version 24.2 that is installed
> on the machine
> in question.  I'm not sure if this was installed from
> source or via
> the yum package manager, but Numeric seems to work.
> 
> $ python
> Python 2.5 (r25:51908, Nov 23 2006, 18:40:28)
> [GCC 4.1.1 20061011 (Red Hat 4.1.1-30)] on linux2
> Type "help", "copyright",
> "credits" or "license" for more
> information.
> >>> import Numeric
> >>> Numeric.__version__
> '24.2'
> 
> I imagine if there was something seriously wrong with this
> Numeric
> installation it would have shown up in other unit tests. 
> So it looks
> like the version of Numeric isn't the issue.  Any other
> ideas?
> 
> I take it you've never had a problem with
> test_SVDSuperimposer.py getting stuck?
> 
> Thanks,
> 
> Peter