[Biopython-dev] [Bug 2532] Using IUPAC alphabets in mixed case Seq objects

[bugzilla-daemon at portal.open-bio.org]

http://bugzilla.open-bio.org/show_bug.cgi?id=2532





------- Comment #5 from biopython-bugzilla at maubp.freeserve.co.uk  2008-09-26 13:13 EST -------
(In reply to comment #0)
> Bio.Nexus and Bio.Sequencing.Phd create Seq objects which use these alphabets
> even with mixed case sequences.
> 
> This contradicts how I think the alphabet's .letters property is intended
> to be used (although currently this is not enforced by the Seq object).

I actually identified this issue by making the Seq object check the .letters
property as an experiment.  I have now filed this as a separate enhancement,
Bug 2597.


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