[Biopython-dev] Sequences and simple plots

[Jared Flatow]

Hi Peter,

Good ideas for some useful examples! (though I can't actually find  
them in the cookbook...)

Anyway I hope you don't mind but while I was looking, I added another  
example for SeqIO input/output that uses the new format method:

http://biopython.org/wiki/SeqIO

I tend to prefer this type of method to SeqIO.write, though I don't  
think it appears anywhere in the documentation

Regards,
jared

On Sep 25, 2008, at 11:15 AM, Peter wrote:

> Hi all,
>
> I've just added a couple of Bio.SeqIO with pylab examples to the  
> cookbook
> chapter of the Biopython tutorial.
>
> The first shows a histogram of sequence lengths in a FASTA file (based
> having recently done this for some real assembly data).
> http://biopython.org/DIST/docs/tutorial/images/hist_plot.png
>
> The second is based on the GC% example we used for the BOSC 2008
> presentation (see http://biopython.org/wiki/ 
> Documentation#Presentations
> for the original). http://biopython.org/DIST/docs/tutorial/images/gc_plot.png
>
> If anyone has any suggestions for similar examples let me know (with  
> code
> would be great - but even a nice idea is worthwhile).
>
> Peter
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