[Biopython-dev] [Bug 2528] NCBIStandalone.blastall(): Replace os.popen3 with subprocess.Popen

[bugzilla-daemon at portal.open-bio.org]

http://bugzilla.open-bio.org/show_bug.cgi?id=2528


biopython-bugzilla at maubp.freeserve.co.uk changed:

           What    |Removed                     |Added
----------------------------------------------------------------------------
             Status|NEW                         |RESOLVED
         Resolution|                            |FIXED




------- Comment #7 from biopython-bugzilla at maubp.freeserve.co.uk  2008-10-10 17:07 EST -------
Note that os.popen3 is deprecated in python 2.6 which gives another reason for
moving to subprocess.

This issue is fixed in Bio/Blast/NCBIStandalone.py revision 1.82, based on
changed discussed on See also Bug 2480.

We use subprocess where present (i.e. python 2.4+) and fall back to os.popen3
(for python 2.3).


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