[Biopython-dev] [Bug 2604] New: test_Restriction failure with Python 2.6 (also cause error in test_CAPS)

[bugzilla-daemon at portal.open-bio.org]

http://bugzilla.open-bio.org/show_bug.cgi?id=2604

           Summary: test_Restriction failure with Python 2.6 (also cause
                    error in test_CAPS)
           Product: Biopython
           Version: Not Applicable
          Platform: PC
        OS/Version: Linux
            Status: NEW
          Severity: normal
          Priority: P2
         Component: Main Distribution
        AssignedTo: biopython-dev at biopython.org
        ReportedBy: bsouthey at gmail.com


Running 'python setup.py test --no-gui' gives the following error for
test_Restriction. This is the same line that cause test_CAPS to fail. Both test
outputs below.

This with Linux x86_64 with Python 2.6 compiled using gcc v4.3.2


======================================================================
ERROR: test_Restriction
----------------------------------------------------------------------
Traceback (most recent call last):
  File "run_tests.py", line 152, in runTest
    self.runSafeTest()
  File "run_tests.py", line 165, in runSafeTest
    cur_test = __import__(self.test_name)
  File "test_Restriction.py", line 8, in <module>
    from Bio.Restriction import *
  File
"/home/bsouthey/python/biopython_cvs/biopython/build/lib.linux-x86_64-2.6/Bio/Restriction/__init__.py",
line 61, in <module>
    from Bio.Restriction.Restriction import *
  File
"/home/bsouthey/python/biopython_cvs/biopython/build/lib.linux-x86_64-2.6/Bio/Restriction/Restriction.py",
line 2351, in <module>
    newenz = T(k, bases, enzymedict[k])
  File
"/home/bsouthey/python/biopython_cvs/biopython/build/lib.linux-x86_64-2.6/Bio/Restriction/Restriction.py",
line 217, in __init__
    super(RestrictionType, cls).__init__(name, bases, dict)
TypeError: descriptor '__init__' requires a 'type' object but received a 'str'

----------------------------------------------------------------------


======================================================================
ERROR: test_CAPS                                                      
----------------------------------------------------------------------
Traceback (most recent call last):                                    
  File "run_tests.py", line 152, in runTest                           
    self.runSafeTest()                                                
  File "run_tests.py", line 165, in runSafeTest                       
    cur_test = __import__(self.test_name)                             
  File "test_CAPS.py", line 3, in <module>                            
    from Bio.Restriction import *                                     
  File
"/home/bsouthey/python/biopython_cvs/biopython/build/lib.linux-x86_64-2.6/Bio/Restriction/__init__.py",
line 61, in <module>
    from Bio.Restriction.Restriction import *                                   
  File
"/home/bsouthey/python/biopython_cvs/biopython/build/lib.linux-x86_64-2.6/Bio/Restriction/Restriction.py",
line 2351, in <module>
    newenz = T(k, bases, enzymedict[k])                                         
  File
"/home/bsouthey/python/biopython_cvs/biopython/build/lib.linux-x86_64-2.6/Bio/Restriction/Restriction.py",
line 217, in __init__ 
    super(RestrictionType, cls).__init__(name, bases, dict)                     
TypeError: descriptor '__init__' requires a 'type' object but received a 'str'  

======================================================================


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