[Biopython-dev] [Bug 2613] test_Wise and test_psw fail under Python 2.3

[bugzilla-daemon at portal.open-bio.org]

http://bugzilla.open-bio.org/show_bug.cgi?id=2613





------- Comment #2 from mdehoon at ims.u-tokyo.ac.jp  2008-10-06 19:45 EST -------
If you look at test_psw and test_wise, you'll see that these make use of
Python's generic test framework, with asserts in the test code. Instead,
Biopython's testing framework expects each test code to print out stuff, which
then gets matched to an output file. Sometimes it makes more sense to use
Python's testing framework directly; there are several more tests for which the
output file required by Biopython does not contain useful information
(output/test_Cluster is another example). In such cases, I suggest we stop
requiring the output file and simply rely on Python's testing framework
directly. This will solve the issue with test_Wise and test_psw, and will let
us get rid of unnecessary output files.


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