[Biopython-dev] [Bug 2677] New: BioSQL seqfeature enhancements

bugzilla-daemon at portal.open-bio.org bugzilla-daemon at portal.open-bio.org
Wed Nov 19 21:49:48 UTC 2008


http://bugzilla.open-bio.org/show_bug.cgi?id=2677

           Summary: BioSQL seqfeature enhancements
           Product: Biopython
           Version: Not Applicable
          Platform: PC
        OS/Version: Linux
            Status: NEW
          Severity: enhancement
          Priority: P2
         Component: BioSQL
        AssignedTo: biopython-dev at biopython.org
        ReportedBy: cymon.cox at gmail.com


Cleaned-up (sub-)seqFeature locations, and strand. Added location_operator
storage and test. Added remote location storage for sub-features, and test.

Ive used the "Sequence Keys" ontology for the location operator and stored loc
op in the location_qualifier_value table - not sure this is right...

Patches attached.


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