[Biopython-dev] [Bug 2670] New: Populate seqfeature.display_name

bugzilla-daemon at portal.open-bio.org bugzilla-daemon at portal.open-bio.org
Tue Nov 18 11:13:31 UTC 2008


http://bugzilla.open-bio.org/show_bug.cgi?id=2670

           Summary: Populate seqfeature.display_name
           Product: Biopython
           Version: Not Applicable
          Platform: All
        OS/Version: All
            Status: NEW
          Severity: enhancement
          Priority: P2
         Component: BioSQL
        AssignedTo: biopython-dev at biopython.org
        ReportedBy: biopython-bugzilla at maubp.freeserve.co.uk


The seqfeature table has a display_name text field, currently left blank by
Biopython's loader, but is populated by BioPerl.  This field is used in GBrowse
for example: http://gmod.org/wiki/GBrowse

We could use the protein_id, locus_tag, etc depending on what annotation is
available (ideally use the same as BioPerl).


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