[Biopython-dev] [Bug 2643] Proposal: fastPhaseOutputIO for SeqIO

[bugzilla-daemon at portal.open-bio.org]

http://bugzilla.open-bio.org/show_bug.cgi?id=2643


dalloliogm at gmail.com changed:

           What    |Removed                     |Added
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Attachment #1042 is|0                           |1
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------- Comment #12 from dalloliogm at gmail.com  2008-11-09 12:29 EST -------
Created an attachment (id=1046)
 --> (http://bugzilla.open-bio.org/attachment.cgi?id=1046&action=view)
fastPhase output iterator (returns Alignment objects)

This is the rewritten fastphaseoutputIO, which returns an Alignment file
instead of SeqRecords objects.
It can still return SeqRecord objects if a 'ret = seqrecord' parameter is
passed, but Alignemnt are returned by default.

Moreover, I have de-capitalized (.lower()) the name of the function, and added
a link to fastPhase article in the documentation (althought I think the doc
would need more work)


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