[Biopython-dev] [Bug 2643] Proposal: fastPhaseOutputIO for SeqIO

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http://bugzilla.open-bio.org/show_bug.cgi?id=2643





------- Comment #1 from dalloliogm at gmail.com  2008-11-06 06:40 EST -------
Created an attachment (id=1042)
 --> (http://bugzilla.open-bio.org/attachment.cgi?id=1042&action=view)
fastPhase output iterator, for SeqIO

If invoked directly, this module tries to call doctest.testfile over a file
called test_fastPhaseOutputIO.py (I will post it in 5 minutes).
You should edit this module to point it to the right file path on your
computer.

This module is thought to be used with SeqIO. You should modify
SeqIO.__init__.py and add it to the _FormatToIterator dictionary. 

I didn't wrote a Writer handler, because you are not supposed to create
fastPhaseOutput files manually (even if it could be useful for testing
purposes).

You can see the git history of this module here: 
-
http://github.com/dalloliogm/biopython---popgen/tree/master/src/PopGen/Gio/fastPhaseOutputIO.py


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