[Biopython-dev] [Bug 2225] Do something with the PROJECT line in GenBank files

[bugzilla-daemon at portal.open-bio.org]

http://bugzilla.open-bio.org/show_bug.cgi?id=2225


biopython-bugzilla at maubp.freeserve.co.uk changed:

           What    |Removed                     |Added
----------------------------------------------------------------------------
             Status|RESOLVED                    |REOPENED
         Resolution|FIXED                       |




------- Comment #2 from biopython-bugzilla at maubp.freeserve.co.uk  2008-11-05 08:31 EST -------
Do you think we have to worry about multiple project lines, or project entries
spanning multiple lines?

This would require a slight difference to the parsing (to append new project
entries instead of replacing any prior entries), and to the output from the
record object (including line wrapping).

HOWEVER, reading the latest ftp://ftp.ncbi.nih.gov/genbank/gbrel.txt it seems
the PROJECT line will be replaced with a DBLINK line next year.

With that in mind, I would now suggest we parse the PROJECT and/or DBLINK lines
and store them in the record.dbxrefs list (rather than in the annotations).


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