[Biopython-dev] [Bug 2502] PSIBlastParser fails with blastpgp 2.2.18 though works with blastpgp 2.2.15

bugzilla-daemon at portal.open-bio.org bugzilla-daemon at portal.open-bio.org
Fri May 30 15:15:16 UTC 2008


------- Comment #18 from biopython-bugzilla at maubp.freeserve.co.uk  2008-05-30 11:15 EST -------
The XML parser seems to be fine on your example output.  However, the XML
output does not appear to list/flag any difference between:

"Sequences used in model and found again"
"Sequences not found previously or not previously below threshold"

This means there is no way to populate the .new_seqs and .reused_seqs lists. 
If you care about this information, then for now using the plain text output
might be best.

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