[Biopython-dev] [Bug 2497] Unit tests do not cover Bio.Blast.NCBIWWW.qblast()

bugzilla-daemon at portal.open-bio.org bugzilla-daemon at portal.open-bio.org
Fri May 9 11:24:48 UTC 2008


------- Comment #1 from biopython-bugzilla at maubp.freeserve.co.uk  2008-05-09 07:24 EST -------
Created an attachment (id=919)
 --> (http://bugzilla.open-bio.org/attachment.cgi?id=919&action=view)
Addition unit test

This is a simple unit test which calls qblast() twice, once using blastp and
once using blastn.

The XML results are then parsed, and it checks that a few pre-defined expected
matches are found.  There is minimal output to the console/output file as I do
not want minor details like the precise number of hits to be reported
(anticpating these to fluctuate as the databases grow).

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