[Biopython-dev] Bio.Entrez XML parsing
Peter
biopython at maubp.freeserve.co.uk
Mon Mar 31 11:25:05 UTC 2008
On Mon, Mar 31, 2008 at 1:51 AM, Sean Davis <sdavis2 at mail.nih.gov> wrote:
> This makes sense. However, it seems that there needs to be a way to
> "register" a parser with read() so that users can extend their local
> installation with a specialized parser. In other words, it seems that
> a way to dynamically register a parser with read() would be helpful.
> Or am I missing something?
I like Michiel's plan. The mapping could be as simple as a (private)
dictionary in Bio.Entrez, mapping formats to parser objects/functions
- as done in Bio.SeqIO - which lets the user add new parsers or
override the built in ones should they so desire.
Peter
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