[Biopython-dev] [Bug 2468] Tutorial needs a fix: Bio.WWW.NCBI

[bugzilla-daemon at portal.open-bio.org]

http://bugzilla.open-bio.org/show_bug.cgi?id=2468





------- Comment #4 from mmokrejs at ribosome.natur.cuni.cz  2008-03-17 09:18 EST -------
Created an attachment (id=880)
 --> (http://bugzilla.open-bio.org/attachment.cgi?id=880&action=view)
taxfetch.py

This program/module can fetch for the user the Lineage line. The query()
function uses the deprecated biopython API while the efetch uses the other.
Queries get cached in a local file taxonomycache.db for speed.

Users can call either of the two functions from external python code. Feel free
to use the code in Tutorial or even bundle in any form into the package.


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