[Biopython-dev] [Bug 2531] Nexus and fasta parsers have a problem with identical taxa names
bugzilla-daemon at portal.open-bio.org
bugzilla-daemon at portal.open-bio.org
Mon Jun 30 17:28:25 UTC 2008
http://bugzilla.open-bio.org/show_bug.cgi?id=2531
------- Comment #11 from biopython-bugzilla at maubp.freeserve.co.uk 2008-06-30 13:28 EST -------
Created an attachment (id=959)
--> (http://bugzilla.open-bio.org/attachment.cgi?id=959&action=view)
Tentative patch to Bio/SeqIO/NexusIO.py
This seems to cope with Andrea's real input file and my two hand written ones.
It works by taking the original_taxon_order lists, and applying the
disambiguation algorithm if needed. Not very elegant!
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