[Biopython-dev] [Bug 2090] Blast.NCBIStandalone BlastParser fails with blastall 2.2.14

[bugzilla-daemon at portal.open-bio.org]

http://bugzilla.open-bio.org/show_bug.cgi?id=2090





------- Comment #16 from biopython-bugzilla at maubp.freeserve.co.uk  2008-06-26 19:47 EST -------
Created an attachment (id=952)
 --> (http://bugzilla.open-bio.org/attachment.cgi?id=952&action=view)
Patch to Bio/Blast/NCBIStandalone.py

This is a very rough attempt at fixing multiquery BLAST output from recent
versions of NCBI BLAST.

It seems to work for the file I tested, but breaks the final part of the unit
test due to the alignments shown as "Flat Query-Anchored with(out) Identities",
described here:

http://www.ncbi.nlm.nih.gov/Education/BLASTinfo/multi_formats.html

See also unit test files bt005 and bt045


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