[Biopython-dev] [Bug 2530] Bio.Seq.translate() treats invalid codons as stops

[bugzilla-daemon at portal.open-bio.org]

http://bugzilla.open-bio.org/show_bug.cgi?id=2530


biopython-bugzilla at maubp.freeserve.co.uk changed:

           What    |Removed                     |Added
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 Attachment #953 is|0                           |1
           obsolete|                            |




------- Comment #3 from biopython-bugzilla at maubp.freeserve.co.uk  2008-06-28 21:57 EST -------
(From update of attachment 953)
There is an underlying issue in Bio.Data.CodonTable, which is at least
commented:

# These two are WRONG!  I need to get the
# list of ambiguous codons which code for                            # the stop
codons  XXX

For example, R = A or G, so UAR = UAA or UAG / TAR = TAA or TAG = stop codons.


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