[Biopython-dev] [Bug 2550] Alphabet problems when adding sequences

bugzilla-daemon at portal.open-bio.org bugzilla-daemon at portal.open-bio.org
Sun Jul 27 18:54:01 UTC 2008


------- Comment #2 from biopython-bugzilla at maubp.freeserve.co.uk  2008-07-27 14:54 EST -------
Created an attachment (id=977)
 --> (http://bugzilla.open-bio.org/attachment.cgi?id=977&action=view)
Patch to Bio/Seq.py and Bio/Alphabet/__init__.py

This uses some (private) alphabet functions in Bio/Alphabet/__init__.py (where
I have already put a few bits extracted from or used by Bio.Align and
Bio.AlignIO), and makes the old Alphabet .contains method effectively obsolete.

Test case update to follow.

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