[Biopython-dev] [Bug 2530] Bio.Seq.translate() treats invalid codons as stops

[bugzilla-daemon at portal.open-bio.org]

http://bugzilla.open-bio.org/show_bug.cgi?id=2530





------- Comment #13 from biopython-bugzilla at maubp.freeserve.co.uk  2008-07-20 10:50 EST -------
Martin,

I've filed Bug 2547 ("Translation of ambiguous codons like NNN and TAN") on the
separate issue of wanting to translate ambigous codons as found in EST
sequences.

This bug (Bug 2530) is only for the mis-translation of invalid codons as stop
characters.

If there is agreement that changing the behaviour of Bio.Seq.translate() as
described in Bug 2547 is desirable, then we end up fixing both issues at the
same time.

Peter


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