[Biopython-dev] [Bug 2542] AlignInfo.py fails a test

[bugzilla-daemon at portal.open-bio.org]

http://bugzilla.open-bio.org/show_bug.cgi?id=2542





------- Comment #3 from biopython-bugzilla at maubp.freeserve.co.uk  2008-07-11 06:39 EST -------
In comment 2 I wrote:
> I've spotted another problem case, doubly extended alphabets like a
> protein alphabet declared Gapped and WithStopCodon (which you *might*
> want in an alignment).

This alphabet issue is fixed in CVS, as is another corner case of a divide by
zero error where an entire column consists of ignored characters.

Please re-test with Bio/Align/AlignInfo.py revision 1.16 from CVS.

Thanks


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