[Biopython-dev] [Bug 2531] Nexus and fasta parsers have a problem with identical taxa names

[bugzilla-daemon at portal.open-bio.org]

http://bugzilla.open-bio.org/show_bug.cgi?id=2531





------- Comment #16 from biopython-bugzilla at maubp.freeserve.co.uk  2008-07-03 09:24 EST -------
Hi Frank,

I see you've updated Bio/Nexus/Nexus.py with CVS revision 1.16 to record the
original taxon order with and without the name changes.

n.unaltered_taxlabels = Original names in order with duplicates
n.original_taxon_order = Modified names in order, suitable as keys to n.matrix

I'll update Bio.SeqIO / Bio.AlignIO to take advantage of this shortly, storing
the original name and the modified unique name as the SeqRecord's name and id
properties.

Peter


-- 
Configure bugmail: http://bugzilla.open-bio.org/userprefs.cgi?tab=email
------- You are receiving this mail because: -------
You are the assignee for the bug, or are watching the assignee.