[Biopython-dev] [Bug 2543] Bio.Nexus.Trees can't handle named ancestors

[bugzilla-daemon at portal.open-bio.org]

http://bugzilla.open-bio.org/show_bug.cgi?id=2543


fkauff at biologie.uni-kl.de changed:

           What    |Removed                     |Added
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             Status|NEW                         |ASSIGNED




------- Comment #2 from fkauff at biologie.uni-kl.de  2008-07-23 10:12 EST -------
I recently got some code that is supposed to be able to deal with labeled nodes
(probably from the author of this bug - can't check now, as I'm traveling and
don't have access to the files). haven't looked at or tested the code yet, but
will do soon when I'm back.

Frank

(In reply to comment #1)
> This sounds like a job for Frank (the Bio.Nexus module author).
> 
> Can I ask if you've actually come across trees with names ancestor nodes in
> "real life"?  That would make this bug more important.  If so, the name of the
> tool would be interesting, an example tree file would be great to add to
> Biopython as a test case.
> 
> If on the other hand the only named ancestor tree you've ever tried is the
> example from the Newick documentation, this doesn't seem such a high priority
> (but still worth fixing).
> 
> Peter
> 


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