[Biopython-dev] [Bug 2530] Bio.Seq.translate() treats invalid codons as stops

[bugzilla-daemon at portal.open-bio.org]

http://bugzilla.open-bio.org/show_bug.cgi?id=2530





------- Comment #10 from mmokrejs at ribosome.natur.cuni.cz  2008-07-19 12:44 EST -------
BTW, formatdb silently ignores asterisks so you have to replace them with X
yourself otherwise alignment outputs from blast do not reflect reality.
Don't know if I would prefer biopython to give me 'X' instead of '*', maybe
for codons with 'N', 'R' would prefer X while for true STOP codons would prefer
'*'. In PIR database is nice that proteins really ending at a STOP codon have a
trailing '*'.


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