[Biopython-dev] [Bug 2454] Iterators can't use file-like objects

bugzilla-daemon at portal.open-bio.org bugzilla-daemon at portal.open-bio.org
Mon Feb 25 15:36:31 EST 2008


http://bugzilla.open-bio.org/show_bug.cgi?id=2454





------- Comment #2 from biopython-bugzilla at maubp.freeserve.co.uk  2008-02-25 15:36 EST -------
I agree with you that this is a problem - its something that gets checked
explicitly for the parsers used in Bio.SeqIO by the unit test which uses a
StringIO handle.

Perhaps Bio/File.py would be a good place to put an "is this a handle"
function, or maybe just replace these existing checks with relevant attribute
checks.


-- 
Configure bugmail: http://bugzilla.open-bio.org/userprefs.cgi?tab=email
------- You are receiving this mail because: -------
You are the assignee for the bug, or are watching the assignee.


More information about the Biopython-dev mailing list