[Biopython-dev] Fwd: [Utilities-announce] PubMed Entrez Utility 2009 DTD changes

[Peter]

This email from the NCBI will be of interest for Bio.Entrez - we may
need to add a few DTD files to Bio.Entrez in preparation for this...
see also Bug 2678.

Peter

---------- Forwarded message ----------
From:  <utilities-announce at ncbi.nlm.nih.gov>
Date: Wed, Dec 3, 2008 at 8:57 PM
Subject: [Utilities-announce] PubMed Entrez Utility 2009 DTD changes
To: utilities-announce at ncbi.nlm.nih.gov



PubMed Entrez Utility Users,

We anticipate switching to the updated PubMed 2009 DTDs on December 15,
2008.

2009 DTDs are available from the Entrez DTD page:
http://eutils.ncbi.nlm.nih.gov/entrez/query/DTD/index.html

The DTD changes for the 2009 production year, as noted in the Revision
Notes section near the top of each DTD, are:

NLMMedline DTD (used for MEDLINE/PubMed)
a. Changed entity reference from "nlmmedlinecitation_080101.dtd" to:
"nlmmedlinecitation_090101.dtd"
b. CHANGE WITHDRAWN FOR V.2: Deleted entity NlmDcmsID.Ref and NlmDcmsID
element [Edited 10/16/08]
c. FOR V.3: Added GrantCountry.Ref entity [Edited 10/30/08]

NLMMedlineCitation DTD (used for MEDLINE/PubMed data)
a. Changed entity reference from "nlmsharedcatcit_080101.dtd" to:
"nlmsharedcatcit_090101.dtd"
b. Moved entity Type to nlmcommon dtd
c. Added NLM value to entity Source
d. CHANGE WITHDRAWN FOR V.2: Deleted entity NlmDcmsID.Ref [Edited
10/16/08]

NLMSharedCatCit DTD (used for MEDLINE/PubMed, CatfilePlus, and Serfile)
a.  Changed entity reference from "nlmcommon_080101.dtd"
to "nlmcommon_090101.dtd"
b.  Moved OtherAbstract element from nlmsharedcatcit dtd to nlmcommon
dtd

NLMCommon DTD (used for MEDLINE/PubMed, CatfilePlus, and Serfile)
a. Added ValidYN attribute to Investigator element
b. Moved OtherAbstract element from nlmsharedcatcit to nlmcommon dtd
c. Added OtherAbstract element to NCBIArticle element
d. Moved entity Type from nlmmedlinecitation to nlmcommon dtd
e. Added Publisher value to entity Type
f. Deleted Consumer value from entity Type
g. Added Country element to Grant element
h. FOR V.2: Changed Country value to GrantCountry.Ref in Grant Element
[Edited 10/30/08]

NLMCatalogRecord DTD (used for CatfilePlus and Serfile in XML format):
a.  Changed entity reference from "nlmsharedcatcit_080101.dtd"
to: "nlmsharedcatcit_090101.dtd"
b.  Added PrecedingInPart, SupersedesInPart, SucceedingInPart,
SupersededInPartBy values to entity TitleType


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