[Biopython-dev] [Bug 2671] Including GenomeDiagram in the main Biopython distribution

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http://bugzilla.open-bio.org/show_bug.cgi?id=2671





------- Comment #11 from biopython-bugzilla at maubp.freeserve.co.uk  2008-12-01 10:36 EST -------
Unit Test
=========
The unit test included, test_GenomeDiagram.py adds yet another GenBank file to
the test suite, NC_005213.gb (Nanoarchaeum equitans, 490885 bp) which at 1.2 MB
is best avoided.  I would prefer we used existing GenBank files already
included in Biopython which would serve just as well.  e.g.

GenBank/NC_005816.gb file (Yersinia pestis biovar Microtus str. 91001 plasmid
pPCP1) which is circular.  9609 bp.

GenBank/arab1.gb (Arabidopsis thaliana BAC T25K16 from chromosome I) which is
linear.  86436 bp.

Also, the code to parse the GenBank file does so via Bio.GenBank, and I would
prefer to use Bio.SeqIO here.

I'll attach a revised version shortly...


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