[Biopython-dev] [Bug 2535] Support for PIR / NBRF format in Bio.SeqIO

[bugzilla-daemon at portal.open-bio.org]

http://bugzilla.open-bio.org/show_bug.cgi?id=2535


biopython-bugzilla at maubp.freeserve.co.uk changed:

           What    |Removed                     |Added
----------------------------------------------------------------------------
             Status|NEW                         |RESOLVED
         Resolution|                            |FIXED




------- Comment #4 from biopython-bugzilla at maubp.freeserve.co.uk  2008-08-08 07:37 EST -------
Marking as fixed - I have checked in support for reading PIR format with
Bio.SeqIO (a cut down version of the above code).  If anyone really wants to
support writing to PIR format that could be added later.

Checking in Tests/test_SeqIO.py;
/home/repository/biopython/biopython/Tests/test_SeqIO.py,v  <--  test_SeqIO.py
new revision: 1.38; previous revision: 1.37
done
Checking in Tests/test_AlignIO.py;
/home/repository/biopython/biopython/Tests/test_AlignIO.py,v  <-- 
test_AlignIO.py
new revision: 1.15; previous revision: 1.14
done
Checking in Tests/output/test_SeqIO;
/home/repository/biopython/biopython/Tests/output/test_SeqIO,v  <--  test_SeqIO
new revision: 1.28; previous revision: 1.27
done
Checking in Tests/output/test_AlignIO;
/home/repository/biopython/biopython/Tests/output/test_AlignIO,v  <-- 
test_AlignIO
new revision: 1.13; previous revision: 1.12
done
Checking in Bio/SeqIO/__init__.py;
/home/repository/biopython/biopython/Bio/SeqIO/__init__.py,v  <--  __init__.py
new revision: 1.37; previous revision: 1.36
done
RCS file: /home/repository/biopython/biopython/Bio/SeqIO/PirIO.py,v
done
Checking in Bio/SeqIO/PirIO.py;
/home/repository/biopython/biopython/Bio/SeqIO/PirIO.py,v  <--  PirIO.py
initial revision: 1.1
done


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