[Biopython-dev] [Bug 2475] BioSQL.Loader should reuse existing taxon entries in lineage

[bugzilla-daemon at portal.open-bio.org]

http://bugzilla.open-bio.org/show_bug.cgi?id=2475





------- Comment #25 from biopython-bugzilla at maubp.freeserve.co.uk  2008-04-08 19:31 EST -------
Hi Eric,

On the BioSQL taxon issue, recalculating the whole taxon table left/right
values each time we add a new entry doesn't seem very sensible.  Could you try
my patch (attachment 883 on this bug) which only records a single entry for the
new NCBI taxon ID (with null left/right values)?

I should have split the Bio.Entrez issue into a separate bug a while ago - but
yes, as things stand it is up to the user to check if they get one or more
records, depending on what they asked for.


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